Stem-loop ocu-mir-98

Accession

MI0039263

Description

Oryctolagus cuniculus ocu-mir-98 precursor miRNA

Literature search

54 open access papers mention ocu-mir-98
(367 sentences)

Sequence

394337 reads, 1152.0 reads per million, 36 experiments

UGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauaagaagauaaCUAUACAACUUACUACUUUCCc
.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))...

Structure

--U                 U    ---------      aggg 
   GAGGUAGUAAGUUGUAU GUUg         uggggu    a
   ||||||||||||||||| ||||         ||||||    u
   UUUCAUCAUUCAACAUA Caau         accccg    u
cCC                 U    agaagaaua      gauu 

Annotation confidence High

Genome context

CM000811.1: 35039088-35039167 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-98

Mature ocu-miR-98-5p

• Accession: MIMAT0048180
• Description: Oryctolagus cuniculus ocu-miR-98-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAAGUUGUAUUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-98-3p

• Accession: MIMAT0048181
• Description: Oryctolagus cuniculus ocu-miR-98-3p mature miRNA
• Sequence: 59 - CUAUACAACUUACUACUUUCC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344