Stem-loop ocu-mir-100

Accession

MI0039265

Description

Oryctolagus cuniculus ocu-mir-100 precursor miRNA

Literature search

58 open access papers mention ocu-mir-100
(375 sentences)

Sequence

17074120 reads, 16874.0 reads per million, 36 experiments

AACCCGUAGAUCCGAACUUGUGgugauaguccacaCAAGCUUGCGUCUAUAGGUCUG
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure

--A   C      C   A      g  au 
   ACC GUAGAU CGA CUUGUG ug  a
   ||| |||||| ||| |||||| ||   
   UGG UAUCUG GUU GAACac ac  g
GUC   A      C   C      -  cu 

Annotation confidence High

Genome context

CM000790.1: 95869540-95869596 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-100

Mature ocu-miR-100-5p

• Accession: MIMAT0048184
• Description: Oryctolagus cuniculus ocu-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-100-3p

• Accession: MIMAT0048185
• Description: Oryctolagus cuniculus ocu-miR-100-3p mature miRNA
• Sequence: 36 - CAAGCUUGCGUCUAUAGGUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344