Stem-loop ocu-mir-105a-1

Accession

MI0039270

Description

Oryctolagus cuniculus ocu-mir-105a-1 precursor miRNA

Sequence

1896 reads, 32.0 reads per million, 23 experiments

UCAAAUGCUCAGACUCCUGUGGUGGcugcucaugcaCCACGGACGUUUGAGCAUGUGCU
.((.(((((((((((((.((((((..........))))))))).)))))))))).))..

Structure

-U  A          -   U      Gcug 
  CA AUGCUCAGAC UCC GUGGUG    c
  || |||||||||| ||| ||||||     
  GU UACGAGUUUG AGG CACCac    u
UC  G          C   -      guac 

Annotation confidence High

Genome context

GL018731.1: 390331-390389 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-105a-1

Mature ocu-miR-105a-5p

• Accession: MIMAT0048192
• Description: Oryctolagus cuniculus ocu-miR-105a-5p mature miRNA
• Sequence: 1 - UCAAAUGCUCAGACUCCUGUGGUGG - 25
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-105a-3p

• Accession: MIMAT0048193
• Description: Oryctolagus cuniculus ocu-miR-105a-3p mature miRNA
• Sequence: 37 - CCACGGACGUUUGAGCAUGUGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344