miRBase entry: ocu-mir-105a-2

Stem-loop ocu-mir-105a-2

Accession

MI0039271

Description

Oryctolagus cuniculus ocu-mir-105a-2 precursor miRNA

Sequence

UCAAAUGCUCAGACUCCUGUGGUGgcugcuuaugcaCCACGGAUGUUUGAGCAUGUGCU
.((.((((((((((..((((((((..........))))))))..)))))))))).))..

Structure

-U  A          UC        gcug 
  CA AUGCUCAGAC  CUGUGGUG    c
  || ||||||||||  ||||||||     
  GU UACGAGUUUG  GGCACCac    u
UC  G          UA        guau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL018731.1: 388180-388238 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-105a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-105a-5p

Accession	MIMAT0048192
Description	Oryctolagus cuniculus ocu-miR-105a-5p mature miRNA
Sequence	1 - UCAAAUGCUCAGACUCCUGUGGUG - 24
Evidence	experimental Illumina [1]

Mature ocu-miR-105a-2-3p

Accession	MIMAT0048194
Description	Oryctolagus cuniculus ocu-miR-105a-2-3p mature miRNA
Sequence	37 - CCACGGAUGUUUGAGCAUGUGCU - 59
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344