Stem-loop ocu-mir-133b

Accession

MI0039288

Description

Oryctolagus cuniculus ocu-mir-133b precursor miRNA

Literature search

45 open access papers mention ocu-mir-133b
(302 sentences)

Sequence

485780 reads, 5597.0 reads per million, 35 experiments

GCUGGUCAAACGGAACCAAGUCCGucuuccugagaggUUUGGUCCCCUUCAACCAGCUa
((((((..((.((.((((((.((.((((...)))))))))))).)).))..))))))..

Structure

--      CA  C  A      U  G    c 
  GCUGGU  AA GG ACCAAG CC ucuu  
  ||||||  || || |||||| || |||| c
  CGACCA  UU CC UGGUUU gg agag  
aU      AC  C  C      -  -    u 

Annotation confidence High

Genome context

CM000801.1: 41642532-41642590 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-133b

Mature ocu-miR-133b-5p

• Accession: MIMAT0048223
• Description: Oryctolagus cuniculus ocu-miR-133b-5p mature miRNA
• Sequence: 1 - GCUGGUCAAACGGAACCAAGUCCG - 24
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-133b-3p

• Accession: MIMAT0048224
• Description: Oryctolagus cuniculus ocu-miR-133b-3p mature miRNA
• Sequence: 38 - UUUGGUCCCCUUCAACCAGCU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344