Stem-loop ocu-mir-134

Accession

MI0039289

Description

Oryctolagus cuniculus ocu-mir-134 precursor miRNA

Literature search

32 open access papers mention ocu-mir-134
(82 sentences)

Sequence

1887 reads, 15.0 reads per million, 33 experiments

UGUGACUGGUUGACCAGAGGGCGUgcgcuguguucaCCCUGUGGGCCACCUAGUCACCAA
.((((((((.((.(((.((((.(.((.....)).).)))).)))..)).))))))))...

Structure

--U        U  -A   G    C U  g 
   GUGACUGG UG  CCA AGGG G gc c
   |||||||| ||  ||| |||| | || u
   CACUGAUC AC  GGU UCCC c ug g
AAC        C  CG   G    a u  u 

Annotation confidence Medium

Genome context

GL019048.1: 143048-143107 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from ocu-mir-134

Mature ocu-miR-134-5p

• Accession: MIMAT0048225
• Description: Oryctolagus cuniculus ocu-miR-134-5p mature miRNA
• Sequence: 1 - UGUGACUGGUUGACCAGAGGGCGU - 24
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-134-3p

• Accession: MIMAT0048226
• Description: Oryctolagus cuniculus ocu-miR-134-3p mature miRNA
• Sequence: 37 - CCCUGUGGGCCACCUAGUCACCAA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344