Stem-loop ocu-mir-138-1

Accession

MI0039295

Description

Oryctolagus cuniculus ocu-mir-138-1 precursor miRNA

Literature search

3 open access papers mention ocu-mir-138-1
(3 sentences)

Sequence

79785 reads, 851.0 reads per million, 36 experiments

AGCUGGUGUUGUGAAUCAGGCCGUugccacuccgagaaCGGCUACUUCACAACACCAGGGU
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))...

Structure

-AG             UCA       gc a 
   CUGGUGUUGUGAA   GGCCGUu  c c
   |||||||||||||   |||||||  | u
   GACCACAACACUU   UCGGCaa  g c
UGG             -CA       ga c 

Annotation confidence High

Genome context

CM000798.1: 448099-448159 [-]

Mature ocu-miR-138-5p

• Accession: MIMAT0048236
• Description: Oryctolagus cuniculus ocu-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCGU - 24
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-138-3p

• Accession: MIMAT0048237
• Description: Oryctolagus cuniculus ocu-miR-138-3p mature miRNA
• Sequence: 39 - CGGCUACUUCACAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344