Stem-loop ocu-mir-145

Accession

MI0039303

Description

Oryctolagus cuniculus ocu-mir-145 precursor miRNA

Literature search

194 open access papers mention ocu-mir-145
(874 sentences)

Sequence

301793 reads, 927.0 reads per million, 36 experiments

GUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggAUUCCUGGAAAUACUGUUCUU
...((((.((.((((((((((((.............)))))))))))).)).)))).....

Structure

--GUC    U  C            uagau 
     CAGU UU CCAGGAAUCCCU     g
     |||| || ||||||||||||     c
     GUCA AA GGUCCUUAgggg     u
UUCUU    U  A            uagaa 

Annotation confidence High

Genome context

CM000792.1: 31259937-31259997 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-145

Mature ocu-miR-145-5p

• Accession: MIMAT0048251
• Description: Oryctolagus cuniculus ocu-miR-145-5p mature miRNA
• Sequence: 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-145-3p

• Accession: MIMAT0048252
• Description: Oryctolagus cuniculus ocu-miR-145-3p mature miRNA
• Sequence: 41 - AUUCCUGGAAAUACUGUUCUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344