Stem-loop ocu-mir-154

Accession

MI0039313

Description

Oryctolagus cuniculus ocu-mir-154 precursor miRNA

Sequence

UAGGUUAUCCGUGUUGCCUUCGcuguacucgugacgAAUCAUACACGGUUGGCCUAUU
(((((((.((((((....(((((.........).))))....)))))).)))))))..

Structure

--       U      UGCC    - ugu 
  UAGGUUA CCGUGU    UUCG c   a
  ||||||| ||||||    |||| |   c
  AUCCGGU GGCACA    AAgc g   u
UU       U      UACU    a ugc 

Annotation confidence Not enough data

Genome context

GL019048.1: 147896-147953 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from ocu-mir-154

Mature ocu-miR-154-5p

• Accession: MIMAT0048271
• Description: Oryctolagus cuniculus ocu-miR-154-5p mature miRNA
• Sequence: 1 - UAGGUUAUCCGUGUUGCCUUCG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-154-3p

• Accession: MIMAT0048272
• Description: Oryctolagus cuniculus ocu-miR-154-3p mature miRNA
• Sequence: 37 - AAUCAUACACGGUUGGCCUAUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344