Stem-loop ocu-mir-197

Accession

MI0039337

Description

Oryctolagus cuniculus ocu-mir-197 precursor miRNA

Literature search

21 open access papers mention ocu-mir-197
(86 sentences)

Sequence

2251 reads, 7.0 reads per million, 35 experiments

UGGGUAGAGAGGGUAGUGGGAGguaagagcucuucacccUUCACCACCUUCUCCACCCAGC
(((((.((((((((.(((((.((((((....))).))).))))).)))))))).)))))..

Structure

--     A        A     A   -   a 
  UGGGU GAGAGGGU GUGGG Ggu aag g
  ||||| |||||||| ||||| ||| |||  
  ACCCA CUCUUCCA CACUU cca uuc c
CG     C        C     c   c   u 

Annotation confidence High

Genome context

CM000802.1: 54594236-54594296 [-]

Mature ocu-miR-197-5p

• Accession: MIMAT0048317
• Description: Oryctolagus cuniculus ocu-miR-197-5p mature miRNA
• Sequence: 1 - UGGGUAGAGAGGGUAGUGGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-197-3p

• Accession: MIMAT0048318
• Description: Oryctolagus cuniculus ocu-miR-197-3p mature miRNA
• Sequence: 40 - UUCACCACCUUCUCCACCCAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344