Stem-loop ocu-mir-200c

Accession

MI0039340

Description

Oryctolagus cuniculus ocu-mir-200c precursor miRNA

Literature search

1 open access papers mention ocu-mir-200c
(3 sentences)

Sequence

CGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure

--    -      A        U   u   gg 
  CGUC UUACCC GCAGUGUU GGg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 

Annotation confidence Not enough data

Genome context

CM000797.1: 32966987-32967049 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-200c

Mature ocu-miR-200c-5p

• Accession: MIMAT0048321
• Description: Oryctolagus cuniculus ocu-miR-200c-5p mature miRNA
• Sequence: 1 - CGUCUUACCCAGCAGUGUUUGG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-200c-3p

• Accession: MIMAT0048322
• Description: Oryctolagus cuniculus ocu-miR-200c-3p mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344