Stem-loop ocu-mir-215

Accession

MI0039349

Description

Oryctolagus cuniculus ocu-mir-215 precursor miRNA

Literature search

24 open access papers mention ocu-mir-215
(118 sentences)

Sequence

899 reads, 5.0 reads per million, 35 experiments

UUGACCUAUGAAAUGACAGAUGAuauggcuaaauuugUCUGUCAUUUCUGUAGGCCAAUa
(((.(((((((((((((((((((...........)))))))))))))).))))).)))..

Structure

--   A     -              uaug 
  UUG CCUAU GAAAUGACAGAUGA    g
  ||| ||||| ||||||||||||||    c
  AAC GGAUG CUUUACUGUCUguu    u
aU   C     U              uaaa 

Annotation confidence High

Genome context

CM000805.1: 52958506-52958565 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-215

Mature ocu-miR-215-5p

• Accession: MIMAT0048339
• Description: Oryctolagus cuniculus ocu-miR-215-5p mature miRNA
• Sequence: 1 - UUGACCUAUGAAAUGACAGAUGA - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-215-3p

• Accession: MIMAT0048340
• Description: Oryctolagus cuniculus ocu-miR-215-3p mature miRNA
• Sequence: 38 - UCUGUCAUUUCUGUAGGCCAAU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344