Stem-loop ocu-mir-217

Accession

MI0039352

Description

Oryctolagus cuniculus ocu-mir-217 precursor miRNA

Literature search

24 open access papers mention ocu-mir-217
(214 sentences)

Sequence

7293 reads, 12.0 reads per million, 21 experiments

aUACUGCAUCAGGAACUGAUUGGAuaagaaucugucaccAUCAGUUCCUAAUGCAUUGCCU
....(((((.((((((((((.(((((......)))).).)))))))))).)))))......

Structure

--aUAC     C          U -    ag 
      UGCAU AGGAACUGAU G GAua  a
      ||||| |||||||||| | ||||   
      ACGUA UCCUUGACUA c cugu  a
UCCGUU     A          c a    cu 

Annotation confidence High

Genome context

CM000791.1: 130108838-130108898 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-217

Mature ocu-miR-217-5p

• Accession: MIMAT0048345
• Description: Oryctolagus cuniculus ocu-miR-217-5p mature miRNA
• Sequence: 2 - UACUGCAUCAGGAACUGAUUGGA - 24
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-217-3p

• Accession: MIMAT0048346
• Description: Oryctolagus cuniculus ocu-miR-217-3p mature miRNA
• Sequence: 40 - AUCAGUUCCUAAUGCAUUGCCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344