Stem-loop ocu-mir-218-1

Accession

MI0039353

Description

Oryctolagus cuniculus ocu-mir-218-1 precursor miRNA

Literature search

3 open access papers mention ocu-mir-218-1
(3 sentences)

Sequence

248949 reads, 897.0 reads per million, 36 experiments

UUGUGCUUGAUCUAACCAUGUGguugcgagguaugaguaaaacAUGGUUCCGUCAAGCACCAUG
..(((((((((..((((((((..((((.........)))).))))))))..)))))))))....

Structure

--UU         CU        Gg    gag 
    GUGCUUGAU  AACCAUGU  uugc   g
    |||||||||  ||||||||  ||||   u
    CACGAACUG  UUGGUAca  aaug   a
GUAC         CC        -a    agu 

Annotation confidence Medium

Genome context

CM000791.1: 11156706-11156769 [+]

Mature ocu-miR-218-5p

• Accession: MIMAT0048347
• Description: Oryctolagus cuniculus ocu-miR-218-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-218-3p

• Accession: MIMAT0048348
• Description: Oryctolagus cuniculus ocu-miR-218-3p mature miRNA
• Sequence: 44 - AUGGUUCCGUCAAGCACCAUG - 64
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344