Stem-loop ocu-mir-221

Accession

MI0039357

Description

Oryctolagus cuniculus ocu-mir-221 precursor miRNA

Literature search

2 open access papers mention ocu-mir-221
(3 sentences)

Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuuuugggcaacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...

Structure

---        U         AUUU    -    u 
   ACCUGGCA ACAAUGUAG    CUGU guuu  
   |||||||| |||||||||    |||| |||| u
   UGGGUCGU UGUUACAUC    GAca cggg  
CUU        C         ----    a    u 

Annotation confidence Not enough data

Genome context

CM000811.1: 30972910-30972972 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-221

Mature ocu-miR-221-5p

• Accession: MIMAT0048354
• Description: Oryctolagus cuniculus ocu-miR-221-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-221-3p

• Accession: MIMAT0048355
• Description: Oryctolagus cuniculus ocu-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344