Stem-loop ocu-mir-222

Accession

MI0039358

Description

Oryctolagus cuniculus ocu-mir-222 precursor miRNA

Literature search

108 open access papers mention ocu-mir-222
(629 sentences)

Sequence

1331193 reads, 3236.0 reads per million, 36 experiments

GGCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUC
(((((((((((((((((((...(((...........)))...))))).))))))))))))))..

Structure

--              -     AUC   ucuu 
  GGCUCAGUAGCCAG UGUAG   Cug    u
  |||||||||||||| |||||   |||    u
  CUGGGUCAUCGGUC ACAUC   gac    g
CU              U     GAu   uaau 

Annotation confidence High

Genome context

CM000811.1: 30973574-30973637 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-222

Mature ocu-miR-222-5p

• Accession: MIMAT0048356
• Description: Oryctolagus cuniculus ocu-miR-222-5p mature miRNA
• Sequence: 1 - GGCUCAGUAGCCAGUGUAGAUCC - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-222-3p

• Accession: MIMAT0048357
• Description: Oryctolagus cuniculus ocu-miR-222-3p mature miRNA
• Sequence: 41 - AGCUACAUCUGGCUACUGGGUCUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344