Stem-loop ocu-mir-224

Accession

MI0039360

Description

Oryctolagus cuniculus ocu-mir-224 precursor miRNA

Literature search

32 open access papers mention ocu-mir-224
(115 sentences)

Sequence

10001 reads, 38.0 reads per million, 36 experiments

CAAGUCACUAGUGGUUCCGUUUAGuagaugguuuacauuucuuCAAAAUGGUGCCCUAGUGACUacaa
..(((((((((.(((.((((((((.(((((.....)))))))...)))))).))))))))))))....

Structure

--CA         U   U      ---  u     g 
    AGUCACUAG GGU CCGUUU   AG agaug u
    ||||||||| ||| ||||||   || ||||| u
    UCAGUGAUC CCG GGUAAA   uc uuuac u
aaca         -   U      ACu  -     a 

Annotation confidence Medium

Genome context

GL018731.1: 727743-727810 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-224

Mature ocu-miR-224-5p

• Accession: MIMAT0048360
• Description: Oryctolagus cuniculus ocu-miR-224-5p mature miRNA
• Sequence: 1 - CAAGUCACUAGUGGUUCCGUUUAG - 24
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-224-3p

• Accession: MIMAT0048361
• Description: Oryctolagus cuniculus ocu-miR-224-3p mature miRNA
• Sequence: 44 - CAAAAUGGUGCCCUAGUGACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344