Stem-loop ocu-mir-452

Accession

MI0039414

Description

Oryctolagus cuniculus ocu-mir-452 precursor miRNA

Literature search

12 open access papers mention ocu-mir-452
(81 sentences)

Sequence

2911 reads, 24.0 reads per million, 36 experiments

aacUGUUUGCAGAGGAAACUGAGACuuuguaacuaugucUCAGUCUCAUCUGCAAAGAAGU
.(((.((((((((.((.((((((((...........)))))))).)).))))))))..)))

Structure

a   -G        G  A        uuug 
 acU  UUUGCAGA GA ACUGAGAC    u
 |||  |||||||| || ||||||||    a
 UGA  AAACGUCU CU UGACUcug    a
-   AG        A  C        uauc 

Annotation confidence High

Genome context

GL018731.1: 726712-726772 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-452

Mature ocu-miR-452-5p

• Accession: MIMAT0048463
• Description: Oryctolagus cuniculus ocu-miR-452-5p mature miRNA
• Sequence: 4 - UGUUUGCAGAGGAAACUGAGAC - 25
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-452-3p

• Accession: MIMAT0048464
• Description: Oryctolagus cuniculus ocu-miR-452-3p mature miRNA
• Sequence: 40 - UCAGUCUCAUCUGCAAAGAAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344