Stem-loop ocu-mir-485

Accession

MI0039416

Description

Oryctolagus cuniculus ocu-mir-485 precursor miRNA

Sequence

AGAGGCUGGCCAUGGUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCU
(((((..((((.((((((.((((...........)))))))).)).))))..)))))..

Structure

--     CU    A  -    A    auuc 
  AGAGG  GGCC UG GUGA UUCg    a
  |||||  |||| || |||| ||||    u
  UCUCC  UCGG AC UACU Gagc    c
UC     UC    C  A    -    gaaa 

Annotation confidence Not enough data

Genome context

GL019048.1: 143743-143801 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from ocu-mir-485

Mature ocu-miR-485-5p

• Accession: MIMAT0048467
• Description: Oryctolagus cuniculus ocu-miR-485-5p mature miRNA
• Sequence: 1 - AGAGGCUGGCCAUGGUGAAUUC - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-485-3p

• Accession: MIMAT0048468
• Description: Oryctolagus cuniculus ocu-miR-485-3p mature miRNA
• Sequence: 38 - GUCAUACACGGCUCUCCUCUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344