Stem-loop ocu-mir-541

Accession

MI0039444

Description

Oryctolagus cuniculus ocu-mir-541 precursor miRNA

Sequence

AAAGGAUUCUGCUGUCGGUCCCACUccaaaguucacagaaugggUGGUGGGCACAGAAUCCAGACU
...((((((((.((((.(..((((((....((((...))))))))))).)))))))))))).....

Structure

--AAA        C    G UC      caaa    a 
     GGAUUCUG UGUC G  CCACUc    guuc  
     |||||||| |||| |  ||||||    |||| c
     CCUAAGAC ACGG U  GGUggg    uaag  
UCAGA        -    G --      ----    a 

Annotation confidence Not enough data

Genome context

GL019048.1: 152092-152157 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ocu-mir-541

Mature ocu-miR-541-5p

• Accession: MIMAT0048523
• Description: Oryctolagus cuniculus ocu-miR-541-5p mature miRNA
• Sequence: 1 - AAAGGAUUCUGCUGUCGGUCCCACU - 25
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-541-3p

• Accession: MIMAT0048524
• Description: Oryctolagus cuniculus ocu-miR-541-3p mature miRNA
• Sequence: 45 - UGGUGGGCACAGAAUCCAGACU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344