Stem-loop ocu-mir-628

Accession

MI0039452

Description

Oryctolagus cuniculus ocu-mir-628 precursor miRNA

Literature search

3 open access papers mention ocu-mir-628
(8 sentences)

Sequence

4969 reads, 32.0 reads per million, 36 experiments

AUGCUGACAUAUUUACUAGAAGguaaaauucauaaccuUCUAGUAAGAGUGGCAGUUGAAG
..((((.(((.(((((((((((((..........))))))))))))).))).)))).....

Structure

---AU    A   A             aaaa 
     GCUG CAU UUUACUAGAAGgu    u
     |||| ||| |||||||||||||     
     UGAC GUG GAAUGAUCUucca    u
GAAGU    G   A             auac 

Annotation confidence High

Genome context

CM000806.1: 17179502-17179562 [+]

Mature ocu-miR-628-5p

• Accession: MIMAT0048539
• Description: Oryctolagus cuniculus ocu-miR-628-5p mature miRNA
• Sequence: 1 - AUGCUGACAUAUUUACUAGAAG - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-628-3p

• Accession: MIMAT0048540
• Description: Oryctolagus cuniculus ocu-miR-628-3p mature miRNA
• Sequence: 39 - UCUAGUAAGAGUGGCAGUUGAAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344