Stem-loop ocu-mir-889

Accession

MI0039473

Description

Oryctolagus cuniculus ocu-mir-889 precursor miRNA

Sequence

AAUGGCUGUCCGUAGUAUGGUCucuauauuuauggugaUUAAUAUCGGACAACCAUUGU
(((((.((((((..((.(((((.((((....)))).)))))))..)))))).)))))..

Structure

--     C      UA  A     u    a 
  AAUGG UGUCCG  GU UGGUC cuau u
  ||||| ||||||  || ||||| ||||  
  UUACC ACAGGC  UA AUUag ggua u
UG     A      UA  -     u    u 

Annotation confidence Not enough data

Genome context

GL019048.1: 138028-138086 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ocu-mir-889

Mature ocu-miR-889-5p

• Accession: MIMAT0048581
• Description: Oryctolagus cuniculus ocu-miR-889-5p mature miRNA
• Sequence: 1 - AAUGGCUGUCCGUAGUAUGGUC - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-889-3p

• Accession: MIMAT0048582
• Description: Oryctolagus cuniculus ocu-miR-889-3p mature miRNA
• Sequence: 39 - UUAAUAUCGGACAACCAUUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344