miRBase entry: ocu-mir-889

Stem-loop ocu-mir-889

Accession

MI0039473

Description

Oryctolagus cuniculus ocu-mir-889 precursor miRNA

Sequence

AAUGGCUGUCCGUAGUAUGGUCucuauauuuauggugaUUAAUAUCGGACAACCAUUGU
(((((.((((((..((.(((((.((((....)))).)))))))..)))))).)))))..

Structure

--     C      UA  A     u    a 
  AAUGG UGUCCG  GU UGGUC cuau u
  ||||| ||||||  || ||||| ||||  
  UUACC ACAGGC  UA AUUag ggua u
UG     A      UA  -     u    u

Annotation confidence Not enough data

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Genome context

GL019048.1: 138028-138086 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ocu-mir-889

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-889-5p

Accession	MIMAT0048581
Description	Oryctolagus cuniculus ocu-miR-889-5p mature miRNA
Sequence	1 - AAUGGCUGUCCGUAGUAUGGUC - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-889-3p

Accession	MIMAT0048582
Description	Oryctolagus cuniculus ocu-miR-889-3p mature miRNA
Sequence	39 - UUAAUAUCGGACAACCAUUGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344