miRBase entry: ocu-mir-1197

Stem-loop ocu-mir-1197

Accession

MI0039474

Description

Oryctolagus cuniculus ocu-mir-1197 precursor miRNA

Sequence

CGGUUGACCAUGGUGUGUACGcuuuaucugugacgUAGGACACAUGGUCUACUUCU
.(((.(((((((.(((.(((((.........).))))..)))))))))).)))...

Structure

--C   U       G   -G    - uuu 
   GGU GACCAUG UGU  UACG c   a
   ||| ||||||| |||  |||| |   u
   UCA CUGGUAC ACA  AUgc g   c
UCU   U       -   GG    a ugu

Annotation confidence Not enough data

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Genome context

GL019048.1: 124893-124948 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ocu-mir-1197

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-1197-5p

Accession	MIMAT0048583
Description	Oryctolagus cuniculus ocu-miR-1197-5p mature miRNA
Sequence	1 - CGGUUGACCAUGGUGUGUACG - 21
Evidence	experimental Illumina [1]

Mature ocu-miR-1197-3p

Accession	MIMAT0048584
Description	Oryctolagus cuniculus ocu-miR-1197-3p mature miRNA
Sequence	36 - UAGGACACAUGGUCUACUUCU - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344