Stem-loop dre-mir-138-2

Accession

MI0039510

Description

Danio rerio dre-mir-138-2 precursor miRNA

Literature search

4 open access papers mention dre-mir-138-2
(9 sentences)

Sequence

6739 reads, 228 reads per million, 11 experiments

gauggagcaggacAGCUGGUGUUGUGAAUCAGGCCGccguggugaaaggguacgGCUUCUUCACAACACCAGGGUcucacuucauc
(((((((..((((..(((((((((((((..((((((((.(......).))..)))))).))))))))))))).))))..)))))))

Structure

       ca    AG             UC      --  g gg 
gauggag  ggac  CUGGUGUUGUGAA  AGGCCG  cc u  u
|||||||  ||||  |||||||||||||  ||||||  || |   
cuacuuc  ucUG  GACCACAACACUU  UUCGgc  gg a  g
       ac    -G             -C      au  g aa 

Annotation confidence Medium

Genome context

chr16: 7836257-7836342 [-]

Mature dre-miR-138-5p

• Accession: MIMAT0001835
• Description: Danio rerio dre-miR-138-5p mature miRNA
• Sequence: 14 - AGCUGGUGUUGUGAAUCAGGCCG - 36
• Evidence: experimental ; cloned [1]

Mature dre-miR-138-2-3p

• Accession: MIMAT0048652
• Description: Danio rerio dre-miR-138-2-3p mature miRNA
• Sequence: 55 - GCUUCUUCACAACACCAGGGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242