Stem-loop dre-mir-181a-3

Accession

MI0039512

Description

Danio rerio dre-mir-181a-3 precursor miRNA

Literature search

18 open access papers mention dre-mir-181a-3
(68 sentences)

Sequence

775721 reads, 50834 reads per million, 11 experiments

gcgagucucagagAACAUUCAACGCUGUCGGUGAGUuugcaagugagaaaaACCAUCGAGUGUUGAGUGUACCcugccucucga
.((((...(((.(.(((((((((((..((((((.((((...........))))))))))))))))))))).).)))...)))).

Structure

g    ucu   a A           UG      A    gcaa 
 cgag   cag g ACAUUCAACGC  UCGGUG GUuu    g
 ||||   ||| | |||||||||||  |||||| ||||    u
 gcuc   guc C UGUGAGUUGUG  AGCUAC CAaa    g
a    ucc   C A           --      -    aaga 

Annotation confidence High

Genome context

chr3: 34197447-34197530 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181a-3

Mature dre-miR-181a-5p

• Accession: MIMAT0001623
• Description: Danio rerio dre-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: not_experimental

Mature dre-miR-181a-3-3p

• Accession: MIMAT0048654
• Description: Danio rerio dre-miR-181a-3-3p mature miRNA
• Sequence: 52 - ACCAUCGAGUGUUGAGUGUACC - 73
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242