Stem-loop dre-mir-181d

Accession

MI0039515

Description

Danio rerio dre-mir-181d precursor miRNA

Literature search

11 open access papers mention dre-mir-181d
(20 sentences)

Sequence

101671 reads, 170.0 reads per million, 124 experiments

uacggcugcaauaUACAUUCAUUGAUGUCGUUGGGUUucacaugugagcgacUCACUGACCAAUGAGUGCAAACugcaguagga
....((((((.....(((((((((..((((.(((((((((....)))..)))))).))))))))))))).....))))))....

Structure

uacg      auaUA         AU    U      --   c 
    gcugca     CAUUCAUUG  GUCG UGGGUU  uca a
    ||||||     |||||||||  |||| ||||||  |||  
    ugacgu     GUGAGUAAC  CAGU ACUcag  agu u
agga      CAAAC         --    C      cg   g 

Annotation confidence High

Genome context

chr21: 8221660-8221743 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181d

Mature dre-miR-181d-5p

• Accession: MIMAT0048657
• Description: Danio rerio dre-miR-181d-5p mature miRNA
• Sequence: 14 - UACAUUCAUUGAUGUCGUUGGGUU - 37
• Evidence: not_experimental

Mature dre-miR-181d-3p

• Accession: MIMAT0048658
• Description: Danio rerio dre-miR-181d-3p mature miRNA
• Sequence: 53 - UCACUGACCAAUGAGUGCAAAC - 74
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242