Stem-loop dre-mir-204-3

Accession

MI0039516

Description

Danio rerio dre-mir-204-3 precursor miRNA

Literature search

4 open access papers mention dre-mir-204-3
(18 sentences)

Sequence

92555 reads, 5689 reads per million, 11 experiments

gugaccuguggguUUCCCUUUGUCAUCCUAUGCCUagaguuugugauaagGCAGGGACAGCAAAGGGAGGCucagccgucac
(((((...(((((((((((((((..((((.(((((.............)))))))))..)))))))))))))))...)))))

Structure

     cug               CA    A     agagu 
gugac   uggguUUCCCUUUGU  UCCU UGCCU     u
|||||   |||||||||||||||  |||| |||||     u
cacug   acuCGGAGGGAAACG  AGGG ACGga     g
     ccg               AC    -     auagu 

Annotation confidence High

Genome context

chr25: 34590792-34590873 [+]

Mature dre-miR-204-5p

• Accession: MIMAT0001279
• Description: Danio rerio dre-miR-204-5p mature miRNA
• Sequence: 14 - UUCCCUUUGUCAUCCUAUGCCU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-204-3-3p

• Accession: MIMAT0048659
• Description: Danio rerio dre-miR-204-3-3p mature miRNA
• Sequence: 51 - GCAGGGACAGCAAAGGGAGGC - 71
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242