Stem-loop dre-mir-23b-2

Accession

MI0039517

Description

Danio rerio dre-mir-23b-2 precursor miRNA

Literature search

5 open access papers mention dre-mir-23b-2
(7 sentences)

Sequence

6619 reads, 750 reads per million, 11 experiments

cugcuggcuguguGGGUUCCUGGCGUGCUGAUUUgugacuuaagauaaaaAUCACAUUGCCAGGGAUUACCACacaaccgccac
....(((((((((((((((((((((((.((((((..............)))))))).))))))))))..)))))))...)))).

Structure

cugc    ---       --          -  C      gugacu 
    uggc   uguguGG  GUUCCUGGCG UG UGAUUU      u
    ||||   |||||||  |||||||||| || ||||||       
    accg   acaCACC  UAGGGACCGU AC ACUAaa      a
---c    cca       AU          U  -      aauaga 

Annotation confidence High

Genome context

chr8: 30167625-30167708 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23b-2

Mature dre-miR-23b-5p

• Accession: MIMAT0048660
• Description: Danio rerio dre-miR-23b-5p mature miRNA
• Sequence: 14 - GGGUUCCUGGCGUGCUGAUUU - 34
• Evidence: not_experimental

Mature dre-miR-23b-3p

• Accession: MIMAT0048661
• Description: Danio rerio dre-miR-23b-3p mature miRNA
• Sequence: 51 - AUCACAUUGCCAGGGAUUACCAC - 73
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242