Stem-loop dre-mir-24b

Accession

MI0039518

Description

Danio rerio dre-mir-24b precursor miRNA

Literature search

5 open access papers mention dre-mir-24b
(81 sentences)

Sequence

2586 reads, 235 reads per million, 11 experiments

gguucaaccuccuGUGCCUACUGAGCUGAUAACAGUugauguauuuagcacUGGCUCAGUUCAGCAGGAACCGgaguuaagccc
((((.(((.(((.((.(((.(((((((((...(((((((.....)))..))))..))))))))).))).)).)))))).)))).

Structure

-    c   c   u  G   A         UAA    --   u 
 gguu aac ucc GU CCU CUGAGCUGA   CAGU  uga g
 |||| ||| ||| || ||| |||||||||   ||||  ||| u
 ccga uug agG CA GGA GACUUGACU   GUca  auu a
c    a   -   C  A   C         -CG    cg   u 

Annotation confidence High

Genome context

chr2: 33905762-33905845 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-24b

Mature dre-miR-24b-5p

• Accession: MIMAT0048662
• Description: Danio rerio dre-miR-24b-5p mature miRNA
• Sequence: 14 - GUGCCUACUGAGCUGAUAACAGU - 36
• Evidence: not_experimental

Mature dre-miR-24b-3p

• Accession: MIMAT0048663
• Description: Danio rerio dre-miR-24b-3p mature miRNA
• Sequence: 52 - UGGCUCAGUUCAGCAGGAACCG - 73
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242