Stem-loop dre-mir-338-3

Accession

MI0039524

Description

Danio rerio dre-mir-338-3 precursor miRNA

Literature search

4 open access papers mention dre-mir-338-3
(14 sentences)

Sequence

6933 reads, 468 reads per million, 11 experiments

ggugucuccuggcAACAAUAUCCUGGUGCUGCCUGAGUacaucucacagacUCCAGCAUCAGUGAUUUUGUUGCcgggggaaaac
....((((((((((((((.((((((((((((...((((.(........)))))))))))))).))).))))))))))))))....

Structure

ggug              U   -         CCU    a auc 
    ucuccuggcAACAA AUC CUGGUGCUG   GAGU c   u
    |||||||||||||| ||| |||||||||   |||| |    
    agggggcCGUUGUU UAG GACUACGAC   CUca g   c
caaa              U   U         ---    - aca 

Annotation confidence High

Genome context

chr3: 51907478-51907562 [-]

Mature dre-miR-338-5p

• Accession: MIMAT0048672
• Description: Danio rerio dre-miR-338-5p mature miRNA
• Sequence: 14 - AACAAUAUCCUGGUGCUGCCUGAGU - 38
• Evidence: not_experimental

Mature dre-miR-338-3p

• Accession: MIMAT0048673
• Description: Danio rerio dre-miR-338-3p mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUGC - 74
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242