Stem-loop cel-mir-55b

Accession

MI0039737

Description

Caenorhabditis elegans cel-mir-55b precursor miRNA

Sequence

431141 reads, 1474.0 reads per million, 39 experiments

aggaauaaggggCUCAGCAGAAACUUAUACGGGUAuagcauauccaaaaaguaUAACCGAUAGGUUUCUGCCGAGucccauuaaguucca
.((((((((((((((.((((((((((((.(((.((((..............)))).))))))))))))))).))))))).))..))))).

Structure

a     --  -       A            A   G    gcauau 
 ggaau  aa ggggCUC GCAGAAACUUAU CGG UAua      c
 |||||  || ||||||| |||||||||||| ||| ||||       
 ccuug  uu cccuGAG CGUCUUUGGAUA GCC AUau      c
a     aa  a       C            -   A    gaaaaa 

Annotation confidence Medium

Genome context

chrX: 13144830-13144919 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cel-mir-55b

Mature cel-miR-55b-5p

• Accession: MIMAT0053615
• Description: Caenorhabditis elegans cel-miR-55b-5p mature miRNA
• Sequence: 13 - CUCAGCAGAAACUUAUACGGGUA - 35
• Evidence: experimental ; Illumina [1]

Mature cel-miR-55b-3p

• Accession: MIMAT0049029
• Description: Caenorhabditis elegans cel-miR-55b-3p mature miRNA
• Sequence: 54 - UAACCGAUAGGUUUCUGCCGAG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28645154
   ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline
   "Brown KC, Svendsen JM, Tucci RM, Montgomery BE, Montgomery TA"
   "Nucleic Acids Res (2017) 45:9093-9107