Stem-loop cel-mir-58c

Accession

MI0039738

Description

Caenorhabditis elegans cel-mir-58c precursor miRNA

Literature search

19 open access papers mention cel-mir-58c
(218 sentences)

Sequence

8106 reads, 16.0 reads per million, 75 experiments

auauucaauugcAACCUGUUGGUUGAUCUCCUAccaaauaauggauaAGAGAUCAGGCAAUAGGUUCAAAagugaauaa
.((((((.(((.(((((((((.((((((((.(((((.....))).)).)))))))).))))))))))))...)))))).

Structure

a      --a   c         G        C  -   a 
 uauuca   uug AACCUGUUG UUGAUCUC UA cca a
 ||||||   ||| ||||||||| |||||||| || ||| u
 auaagu   AAC UUGGAUAAC GACUAGAG au ggu a
a      gaA   -         G        A  a   a 

Annotation confidence High

Genome context

chrIV: 6660634-6660712 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-58c

Mature cel-miR-58c-5p

• Accession: MIMAT0053616
• Description: Caenorhabditis elegans cel-miR-58c-5p mature miRNA
• Sequence: 13 - AACCUGUUGGUUGAUCUCCUA - 33
• Evidence: experimental ; Illumina [1]

Mature cel-miR-58c-3p

• Accession: MIMAT0049030
• Description: Caenorhabditis elegans cel-miR-58c-3p mature miRNA
• Sequence: 48 - AGAGAUCAGGCAAUAGGUUCAAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28645154
   ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline
   "Brown KC, Svendsen JM, Tucci RM, Montgomery BE, Montgomery TA"
   "Nucleic Acids Res (2017) 45:9093-9107