Stem-loop cel-mir-58c

Accession

MI0039738

Description

Caenorhabditis elegans cel-mir-58c precursor miRNA

Literature search

19 open access papers mention cel-mir-58c
(216 sentences)

Sequence

183 reads, 5 reads per million, 15 experiments

auauucaauugcaaccuguugguugaucuccuaccaaauaauggauaAGAGAUCAGGCAAUAGGUUCAAAagugaauaa
.((((((.(((.(((((((((.((((((((.(((((.....))).)).)))))))).))))))))))))...)))))).

Structure

a      --a   c         g        c  -   a 
 uauuca   uug aaccuguug uugaucuc ua cca a
 ||||||   ||| ||||||||| |||||||| || ||| u
 auaagu   AAC UUGGAUAAC GACUAGAG au ggu a
a      gaA   -         G        A  a   a 

Annotation confidence Low

Genome context

chrIV: 6660634-6660712 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-58c

Mature cel-miR-58c

• Accession: MIMAT0049030
• Description: Caenorhabditis elegans cel-miR-58c mature miRNA
• Sequence: 48 - AGAGAUCAGGCAAUAGGUUCAAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28645154
   ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline
   "Brown KC, Svendsen JM, Tucci RM, Montgomery BE, Montgomery TA"
   "Nucleic Acids Res (2017) 45:9093-9107