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miRBase entry: ppa-mir-299
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppa-mir-299
Accession
MI0039753
Description
Pan paniscus
ppa-mir-299 precursor miRNA
Literature search
1 open access papers
mention ppa-mir-299
(3 sentences)
Sequence
Copy Sequence
ugguuuaccgucccacauacauuuugaauaugUAUGUGGGACGGUAAACCGCU
.(((((((((((((((((((((.......)))))))))))))))))))))...
Structure
--u uu gguuuaccgucccacauacau u ||||||||||||||||||||| g CCAAAUGGCAGGGUGUAUgua a UCG ua
Annotation confidence
Low
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Genome context
chr14: 100958467-100958519 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppa-mir-299
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Database links
References
PubMed ID:
28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596