miRBase entry: cja-mir-98

Stem-loop cja-mir-98


Accession
MI0040038
Description
Callithrix jacchus cja-mir-98 precursor miRNA


Sequence

31838 reads, 3047.0 reads per million, 1 experiments
UGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaaCUAUACAACUUACUACUUUCCc
.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))...

Structure
--U                 U    ---------      aggg 
   GAGGUAGUAAGUUGUAU GUUg         uggggu    a
   ||||||||||||||||| ||||         ||||||    u
   UUUCAUCAUUCAACAUA Caau         accccg    a
cCC                 U    agaagauua      gauu 


Annotation confidence High
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Genome context
ref|NC_071464.1|: 52169913-52169992 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-98-5p

Accession MIMAT0049302
Description Callithrix jacchus cja-miR-98-5p mature miRNA
Sequence 1 - UGAGGUAGUAAGUUGUAUUGUU - 22
Evidence experimental
Illumina [1]

Mature cja-miR-98-3p

Accession MIMAT0061594
Description Callithrix jacchus cja-miR-98-3p mature miRNA
Sequence 59 - CUAUACAACUUACUACUUUCC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596