miRBase entry: cja-mir-29a

Stem-loop cja-mir-29a


Accession
MI0040042
Description
Callithrix jacchus cja-mir-29a precursor miRNA


Sequence

268188 reads, 25667.0 reads per million, 1 experiments
ACUGAUUUCUUUUGGUGUUCAGAgucaauauaauuuucUAGCACCAUCUGAAAUCGGUUA
(((((((((...(((((((.((((...........)))))))))))...)))))))))..

Structure
--         UUU       C    ucaa 
  ACUGAUUUC   UGGUGUU AGAg    u
  |||||||||   ||||||| ||||    a
  UGGCUAAAG   ACCACGA Ucuu    u
AU         UCU       -    uuaa 


Annotation confidence High
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Genome context
ref|NC_071449.1|: 113646743-113646802 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-29a-5p

Accession MIMAT0061598
Description Callithrix jacchus cja-miR-29a-5p mature miRNA
Sequence 1 - ACUGAUUUCUUUUGGUGUUCAGA - 23
Evidence experimental
Illumina [1]

Mature cja-miR-29a-3p

Accession MIMAT0049306
Description Callithrix jacchus cja-miR-29a-3p mature miRNA
Sequence 39 - UAGCACCAUCUGAAAUCGGUUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596