Stem-loop cja-mir-340

Accession

MI0040051

Description

Callithrix jacchus cja-mir-340 precursor miRNA

Sequence

3008 reads, 288.0 reads per million, 1 experiments

UUAUAAAGCAAUGAGACUGAUUgucauauguuguugugggaUCCGUCUCAGUUACUUUAUAGCC
((((((((...((((((.((((.(((((......))))))))).))))))....))))))))..

Structure

--        -CAA      U    g     ug 
  UUAUAAAG    UGAGAC GAUU ucaua  u
  ||||||||    |||||| |||| |||||   
  GAUAUUUC    ACUCUG CUag ggugu  u
CC        AUUG      C    -     ug 

Annotation confidence High

Genome context

ref|NC_071443.1|: 68420018-68420082 [+]

Mature cja-miR-340-5p

• Accession: MIMAT0049315
• Description: Callithrix jacchus cja-miR-340-5p mature miRNA
• Sequence: 1 - UUAUAAAGCAAUGAGACUGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature cja-miR-340-3p

• Accession: MIMAT0061601
• Description: Callithrix jacchus cja-miR-340-3p mature miRNA
• Sequence: 42 - UCCGUCUCAGUUACUUUAUAGCC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596