Stem-loop cja-mir-25

Accession

MI0040053

Description

Callithrix jacchus cja-mir-25 precursor miRNA

Literature search

1 open access papers mention cja-mir-25
(1 sentences)

Sequence

15824 reads, 1514.0 reads per million, 1 experiments

AGGCGGAGACUUGGGCAAUUGCUggacgcugcccugggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..

Structure

--    G     UU G     UG    acg 
  AGGC GAGAC  G GCAAU  CUgg   c
  |||| |||||  | |||||  ||||    
  UCUG CUCUG  C CGUUA  gguc   u
AG    G     UU A     Cg    ccg 

Annotation confidence High

Genome context

ref|NC_071443.1|: 11551002-11551061 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-25

Mature cja-miR-25-5p

• Accession: MIMAT0061603
• Description: Callithrix jacchus cja-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature cja-miR-25-3p

• Accession: MIMAT0049317
• Description: Callithrix jacchus cja-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596