Stem-loop cja-mir-106b

Accession

MI0040054

Description

Callithrix jacchus cja-mir-106b precursor miRNA

Literature search

1 open access papers mention cja-mir-106b
(3 sentences)

Sequence

134568 reads, 12879.0 reads per million, 1 experiments

UAAAGUGCUGACAGUGCAGAUAgugguccucuccgugcUACCGCACUGUGGGUACUUGCUg
..(((((((.(((((((.(.((((((......))..))))).))))))).)))))))....

Structure

--UA       G       A A    --  uc 
    AAGUGCU ACAGUGC G UAgu  gg  c
    ||||||| ||||||| | ||||  ||   
    UUCAUGG UGUCACG C AUcg  cc  u
gUCG       G       C -    ug  uc 

Annotation confidence Medium

Genome context

ref|NC_071443.1|: 11550569-11550629 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-106b

Mature cja-miR-106b-5p

• Accession: MIMAT0049318
• Description: Callithrix jacchus cja-miR-106b-5p mature miRNA
• Sequence: 1 - UAAAGUGCUGACAGUGCAGAUA - 22
• Evidence: experimental ; Illumina [1]

Mature cja-miR-106b-3p

• Accession: MIMAT0061604
• Description: Callithrix jacchus cja-miR-106b-3p mature miRNA
• Sequence: 39 - UACCGCACUGUGGGUACUUGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596