miRBase entry: cja-mir-28

Stem-loop cja-mir-28


Accession
MI0040055
Description
Callithrix jacchus cja-mir-28 precursor miRNA


Sequence

6649 reads, 636.0 reads per million, 1 experiments
AAGGAGCUCACAGUCUAUUGAGuugccucucuaacuuuccCACUAGAUUGUAAGCUCCUGGA
.(((((((.((((((((.(((((((......)))))....)).)))))))).)))))))...

Structure
--A       C        U  ----     cc 
   AGGAGCU ACAGUCUA UG    AGuug  u
   ||||||| |||||||| ||    |||||   
   UCCUCGA UGUUAGAU AC    ucaau  c
AGG       A        C  ccuu     cu 


Annotation confidence High
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Genome context
ref|NC_071456.1|: 11419124-11419185 [+]

Database links

Mature cja-miR-28-5p

Accession MIMAT0061605
Description Callithrix jacchus cja-miR-28-5p mature miRNA
Sequence 1 - AAGGAGCUCACAGUCUAUUGAG - 22
Evidence experimental
Illumina [1]

Mature cja-miR-28-3p

Accession MIMAT0049319
Description Callithrix jacchus cja-miR-28-3p mature miRNA
Sequence 41 - CACUAGAUUGUAAGCUCCUGGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596