Stem-loop cja-let-7d-1

Accession

MI0040063

Description

Callithrix jacchus cja-let-7d-1 precursor miRNA

Literature search

1 open access papers mention cja-let-7d-1
(1 sentences)

Sequence

10848 reads, 1038.0 reads per million, 1 experiments

AGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagcuaaCUAUACGACCUGCUGCCUUUC
.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))..

Structure

-A              C      -------uua      g 
  GAGGUAGUAGGUUG AUAGUU          gggcag g
  |||||||||||||| ||||||          |||||| a
  UUCCGUCGUCCAGC UAUCaa          cccguu u
CU              A      ucgaggaaca      u 

Annotation confidence High

Genome context

ref|NC_071442.1|: 71148427-71148501 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-let-7d-1

Mature cja-let-7d-5p

• Accession: MIMAT0049327
• Description: Callithrix jacchus cja-let-7d-5p mature miRNA
• Sequence: 1 - AGAGGUAGUAGGUUGCAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cja-let-7d-3p

• Accession: MIMAT0061607
• Description: Callithrix jacchus cja-let-7d-3p mature miRNA
• Sequence: 55 - CUAUACGACCUGCUGCCUUUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596