miRBase entry: cja-mir-19a

Stem-loop cja-mir-19a


Accession
MI0040065
Description
Callithrix jacchus cja-mir-19a precursor miRNA


Sequence

20342 reads, 1947.0 reads per million, 1 experiments
AGUUUUGCAUAGUUGCACUAcaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGA
((((((((((((((((((((((.......))))...))))))..))))))))))))..

Structure
--            --      ---    ag 
  AGUUUUGCAUAG  UUGCAC   UAca  a
  ||||||||||||  ||||||   ||||  a
  UCAAAACGUAUC  AACGUG   augu  g
AG            UA      Uug    aa 


Annotation confidence High
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Genome context
ref|NC_071442.1|: 6487135-6487192 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cja-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-19a-5p

Accession MIMAT0061609
Description Callithrix jacchus cja-miR-19a-5p mature miRNA
Sequence 1 - AGUUUUGCAUAGUUGCACUA - 20
Evidence experimental
Illumina [1]

Mature cja-miR-19a-3p

Accession MIMAT0049329
Description Callithrix jacchus cja-miR-19a-3p mature miRNA
Sequence 36 - UGUGCAAAUCUAUGCAAAACUGA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596