Stem-loop aof-MIR12140

Accession

MI0040517

Description

Asparagus officinalis aof-MIR12140 precursor miRNA

Sequence

agcugcauuugcagcgguauagagcugcguuugcagcgacuguagagcuacguuugcggcgguauggaacugcguuugcagcgguauggagcuguggaugcaguggccgaagagcugcguuuguagcgauauggagcuacgUUGGCAGCGGCUGUAGAGCUGCguuugcagcg
.((((((..((((((..(((((.(((((...((.(((..(((((..((((((..((((((....(((.((((((((((((((........))))))))))))))..)))....))))))..))))))..))))).))).))...)))))..)))))..))))))..)))))).

Structure

a      uu      gg     -a     guu  c   ga     ga      uu      ggua   -a              ggu 
 gcugca  ugcagc  uauag  gcugc   ug agc  cugua  gcuacg  ugcggc    ugg  acugcguuugcagc   a
 ||||||  ||||||  |||||  |||||   || |||  |||||  ||||||  ||||||    |||  ||||||||||||||    
 cgacgu  gCGUCG  AUGUC  CGACG   gc ucg  gguau  cgaugu  gcgucg    gcc  ugacguaggugucg   u
g      uu      AG     GG     GUU  a   -a     ag      uu      agaa   gg              agg 

Annotation confidence Not enough data

Genome context

chr7: 38140717-38140889 [+]

Mature aof-miR12140

• Accession: MIMAT0049723
• Description: Asparagus officinalis aof-miR12140 mature miRNA
• Sequence: 142 - UUGGCAGCGGCUGUAGAGCUGC - 163
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279