Stem-loop aof-MIR12143

Accession

MI0040520

Description

Asparagus officinalis aof-MIR12143 precursor miRNA

Sequence

gagcguccggUCGGGUGCAGUUGGAUCUGCGaugcguuuucaguuuuaacaaacggauguaacuggauuuguauaaccagguccuacuacacccaaccaaacgcucccaacgugcugaagauaucuaagguugguuccgguaaacgcaaacuacgaagagguaauaucgcuauguugaaaacuacauuauuuuccgaagacuuuauuuuauuuuccgagcuaugugcugaguauauuagcugauccacuugggcccguaucggauggaa
((((((..(((.(((((.(((.(((((((..(((((..(((((((...(((......))))))))))..)))))...))))))).))).))))).)))..))))))(((((.(...((.....))..).))))).(((((((...((.......((..((.((((((.(((..((........((((....(((.(((((..........))))).)))..))))))..))))))))).))..)).......))...))))))).....

Structure

-------------------------------------------------------------------------------------------------------------------------------------------------------------------      cc   C     C   U       -CG     uu       uua   aa 
                                                                                                                                                                   gagcgu  ggU GGGUG AGU GGAUCUG   augcg  uucaguu   aca  c
                                                                                                                                                                   ||||||  ||| ||||| ||| |||||||   |||||  |||||||   |||   
                                                                                                                                                                   cucgca  cca cccac uca ccuggac   uaugu  aggucaa   ugu  g
aagguaggcuaugcccggguucaccuagucgauuauaugagucguguaucgagccuuuuauuuuauuucagaagccuuuuauuacaucaaaaguuguaucgcuauaauggagaagcaucaaacgcaaauggccuugguuggaaucuauagaagucgugcaacc      aa   a     a   u       caa     uu       ---   ag 

Annotation confidence Not enough data

Genome context

chr4: 49279682-49279950 [+]

Mature aof-miR12143

• Accession: MIMAT0049726
• Description: Asparagus officinalis aof-miR12143 mature miRNA
• Sequence: 11 - UCGGGUGCAGUUGGAUCUGCG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279