Stem-loop aof-MIR12147

Accession

MI0040524

Description

Asparagus officinalis aof-MIR12147 precursor miRNA

Sequence

cagacgcaauguggagcaacugcucuugaagcuuguacauuuggcugaucgUCGAGAUGUGAAGGACUUUGUcuugcuacag
.((((.......(((((....))))).(((((((.((((((((((.....))).))))))).))).))))))))........

Structure

-------c    gcaauguggagcaacugcucuu    -   g       -   u 
        agac                      gaag cuu uacauuu ggc g
        ||||                      |||| ||| ||||||| ||| a
        ucUG                      UUUC GGA GUGUAGA CUg u
gacaucgu    ----------------------    A   A       G   c 

Annotation confidence Not enough data

Genome context

chr7: 141192672-141192753 [-]

Mature aof-miR12147

• Accession: MIMAT0049730
• Description: Asparagus officinalis aof-miR12147 mature miRNA
• Sequence: 52 - UCGAGAUGUGAAGGACUUUGU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279