Stem-loop aof-MIR12149

Accession

MI0040526

Description

Asparagus officinalis aof-MIR12149 precursor miRNA

Sequence

gauuaauaucucauuuuguauugaagauuuaaguaagaaguuuguaauuacuuacuaauuuuuguugcaucuuucauggaaaaugcuucuucaaaugggacaaaguuguuaaauauguucuccagguggaauccuguuggUGCUUCUUUGAUCGAUACGUCUuuuguuagua
.(((((((...((((((.(((.((((((.(((...(((((((.((((....)))).))))))).))).)))))).))).))))))...........(((((...(((((((((...((.((.((((......))))..)).))...))))).))))..))))).))))))).

Structure

g       ucucauuuuguauugaagauuuaaguaagaaguuuguaauuacuuacuaauuuuuguugcaucuuucauggaaaaugcuucuucaaau     aaa    -     uau  u  -c    ug 
 auuaaua                                                                                        gggac   guug uuaaa   gu cu  cagg  g
 |||||||                                                                                        |||||   |||| |||||   || ||  ||||   
 ugauugu                                                                                        uUCUG   UAGC AGUUU   CG gg  gucc  a
a       ---------------------------------------------------------------------------------------u     -CA    U     CUU  U  uu    ua 

Annotation confidence Not enough data

Genome context

chr4: 7260109-7260280 [+]

Mature aof-miR12149

• Accession: MIMAT0049732
• Description: Asparagus officinalis aof-miR12149 mature miRNA
• Sequence: 141 - UGCUUCUUUGAUCGAUACGUCU - 162
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279