Stem-loop aof-MIR12150

Accession

MI0040527

Description

Asparagus officinalis aof-MIR12150 precursor miRNA

Sequence

168 reads, 136.0 reads per million, 10 experiments

auugaauuuauUAACAGCAUUGUCGAAAAGCggucgauaacaauuucagaaggagauugugcaaaauauagagcaaaguuuugugcaacucucuuguaugcacgcgauucaccuuuuuuguaaauauuauuuaaauuuucaccaugguguuuguuuuguaugcaauaUGUGGAUGAUAUUAUGUGGAugauauuauguggacgauacccucauuugauauuaugugguugauauuuuguaa
....((..(((((((.(((((((((((.((.(((((...((..........((((((((((((((((..........))))))))))).)))))((((((((.((((..((((.....((.((((.........)))).))....)))).))))..))))))))........((((((((((....))))))))))))...)))..))))..)))))))..)))).)))))))..))....

Structure

auug  uu       A    --       -A  C  --   aua  aauuucagaaggagauugugcaaaauauagagcaaaguuuugugcaacucucuuguaugcacgcgauucaccuuuuuuguaaauauuauuuaaauuuucaccaugguguuuguuuuguaugcaauaUGUGG          G 
    aa  uauUAAC GCAU  UGUCGAA  AG gg  ucg   ac                                                                                                                                   AUGAUAUUAU U
    ||  ||||||| ||||  |||||||  || ||  |||   ||                                                                                                                                   ||||||||||  
    uu  auaguug ugua  auaguuu  uc cc  agc   ug                                                                                                                                   uauuauaguA G
aaug  uu       g    uu       ac  -  au   agg  -----------------------------------------------------------------------------------------------------------------------------------          G 

Annotation confidence Not enough data

Genome context

chr3: 97928475-97928715 [-]

Mature aof-miR12150-5p

• Accession: MIMAT0049733
• Description: Asparagus officinalis aof-miR12150-5p mature miRNA
• Sequence: 12 - UAACAGCAUUGUCGAAAAGC - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR12150-3p

• Accession: MIMAT0060710
• Description: Asparagus officinalis aof-miR12150-3p mature miRNA
• Sequence: 168 - UGUGGAUGAUAUUAUGUGGA - 187
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279