Stem-loop aof-MIR12151

Accession

MI0040528

Description

Asparagus officinalis aof-MIR12151 precursor miRNA

Sequence

aauugcuguuagguuucccaauucucguaaguuguuucaaauuaguaacucuaguagcuacuucuacuauuaauuggaggacuaauuucaaaaUAACUUAAGAAUUGGGGAACCuaaagcaacu
..(((((.(((((((((((((((((..((((((((((.((((((((..(((((((((......))))).......)))).))))))))..))))))))))))))))))))))))))))))))..

Structure

aa     g                 cg          -c        aa    -------     cu 
  uugcu uuagguuucccaauucu  uaaguuguuu  aaauuagu  cucu       aguag  a
  ||||| |||||||||||||||||  ||||||||||  ||||||||  ||||       |||||   
  aacga aauCCAAGGGGUUAAGA  AUUCAAUaaa  uuuaauca  gagg       ucauc  c
uc     -                 --          ac        -g    uuaauua     uu 

Annotation confidence Not enough data

Genome context

chr1: 116885914-116886037 [-]

Mature aof-miR12151

• Accession: MIMAT0049734
• Description: Asparagus officinalis aof-miR12151 mature miRNA
• Sequence: 94 - UAACUUAAGAAUUGGGGAACC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279