Stem-loop aof-MIR12154

Accession

MI0040531

Description

Asparagus officinalis aof-MIR12154 precursor miRNA

Sequence

aacccuggucgcuuguuuuggggaugcgcuaauugaaaagugagaaaUUGUGGAUUCUUCAAAUGAGUgucugaugaa
......((.(((((((((.((((((.(((.((((...........))))))).)))))).))))))))).))......

Structure

aacccu  u         u      g   u    gaaa 
      gg cgcuuguuu ggggau cgc aauu    a
      || ||||||||| |||||| ||| ||||    g
      uc gUGAGUAAA UUCUUA GUG UUaa    u
aaguag  u         C      G   -    agag 

Annotation confidence Not enough data

Genome context

chr5: 80757313-80757390 [-]

Mature aof-miR12154

• Accession: MIMAT0049737
• Description: Asparagus officinalis aof-miR12154 mature miRNA
• Sequence: 48 - UUGUGGAUUCUUCAAAUGAGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279