Stem-loop aof-MIR12155

Accession

MI0040532

Description

Asparagus officinalis aof-MIR12155 precursor miRNA

Sequence

cuagcaggugggugguucucguccuuacaacggcgaagacagauuaccauucugccacccuguuuuguccUGUGUAUGGACGAGAACCGGCcgcuugcaug
...((((((((.((((((((((((.((((..((..(((((((.................)))))))..))..)))).)))))))))))).))))))))...

Structure

cua        g            u    ac  cg       auuacca 
   gcaggugg ugguucucgucc uaca  gg  aagacag       u
   |||||||| |||||||||||| ||||  ||  |||||||       u
   cguucgcC GCCAAGAGCAGG AUGU  cc  uuuuguc       c
gua        G            U    GU  ug       ccaccgu 

Annotation confidence Not enough data

Genome context

chr8: 109829686-109829786 [+]

Mature aof-miR12155

• Accession: MIMAT0049738
• Description: Asparagus officinalis aof-miR12155 mature miRNA
• Sequence: 71 - UGUGUAUGGACGAGAACCGGC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279