Stem-loop aof-MIR12156

Accession

MI0040533

Description

Asparagus officinalis aof-MIR12156 precursor miRNA

Sequence

cacucagguuCUCUGUAGAUGUCGCGAUGGAggaaugagccaauuaggaagcuuucccugaugucaauaucggggaguucgacgaacauucccucgaucaagugacgagcuucucuaaggcugaccauagauugcuugcugauaugcuaucggaguaagcacaucgugaggcuacaggaccaacuauugaggu
..((((((((.(((((((.(.((((((((..((..(.((((..(((((((((((........((((..((((((((((((...))))..)))).))))....))))))))))).)))))))).)))......((((((((((((...))))..)))))))))))))))).))))))))...))))..))))..

Structure

ca    --    --C       A G        ---------------------------------GA  aa g    aa    -       ucccugau    --au    -    --    g 
  cuca  gguu   UCUGUAG U UCGCGAUG                                   gg  u agcc  uuag gaagcuu        guca    aucg ggga  guuc  
  ||||  ||||   ||||||| | ||||||||                                   ||  | ||||  |||| |||||||        ||||    |||| ||||  |||| a
  gagu  ucaa   ggacauc g agugcuac                                   cc  a ucgg  aauc cuucgag        cagu    uagc cccu  caag  
ug    ua    cca       - g        acgaaugaggcuaucguauagucguucguuagaua  -- g    --    u       --------    gaac    u    ua    c 

Annotation confidence Not enough data

Genome context

chr4: 75449530-75449722 [+]

Mature aof-miR12156

• Accession: MIMAT0049739
• Description: Asparagus officinalis aof-miR12156 mature miRNA
• Sequence: 11 - CUCUGUAGAUGUCGCGAUGGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279